* using log directory ‘/home/user/chk_tidydiversity/tidydiversity.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu3) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu3) 13.2.0
* running under: Ubuntu 24.04.5 LTS
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘tidydiversity/DESCRIPTION’ ... OK
* this is package ‘tidydiversity’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [1s/15s] NOTE
Maintainer: ‘Jimmy Moses <jimmy.moses@pnguot.ac.pg>’

Found the following (possibly) invalid URLs:
  URL: https://CRAN.R-project.org/package=iNEXT.3D
    From: man/beta_hill.Rd
          man/div_estimate.Rd
          man/div_hill.Rd
          man/div_rarefy.Rd
          man/div_standardise.Rd
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://CRAN.R-project.org/package=vegan
    From: man/ord_fit.Rd
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://creativecommons.org/licenses/by/4.0/
    From: man/wanang_caterpillars.Rd
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://doi.org/10.1002/ecm.1343
    From: README.md
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://doi.org/10.1111/btp.12671
    From: README.md
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://doi.org/10.1111/btp.13283
    From: README.md
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://doi.org/10.1111/ecog.04730
    From: README.md
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://doi.org/10.1111/geb.13757
    From: README.md
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://doi.org/10.1146/annurev-ecolsys-120213-091540
    From: README.md
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://doi.org/10.15468/7e96ht
    From: README.md
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://doi.org/10.5281/zenodo.24046912
    From: README.md
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://github.com/weecology/PortalData
    From: man/portal_rodents.Rd
    Status: 403
    Message: Forbidden
  URL: https://jfly.uni-koeln.de/color/
    From: man/theme_tidydiversity.Rd
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://lifecycle.r-lib.org/articles/stages.html#experimental
    From: README.md
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://patchwork.data-imaginist.com
    From: man/plot_panel.Rd
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://recipes.tidymodels.org
    From: man/step_hill.Rd
    Status: Error
    Message: libcurl error code 56:
      	CONNECT tunnel failed, response 403
  URL: https://tidydiversity.in4metrix.dev/cran-check.txt
    From: README.md
    Status: 404
    Message: Not Found
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tidydiversity’ can be installed ... [10s/10s] OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... NOTE
Compilation used the following non-portable flag(s):
  ‘-mno-omit-leaf-frame-pointer’
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [27s/27s] OK
* checking examples with --run-donttest ... [32s/33s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [29s/30s] OK
  Running ‘testthat.R’ [29s/30s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [13s/13s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... NOTE
Skipping checking HTML validation: no command 'tidy' found
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs